iSEEtree - Interactive visualisation for microbiome data
iSEEtree is an extension of iSEE for the TreeSummarizedExperiment data container. It provides interactive panel designs to explore hierarchical datasets, such as the microbiome and cell lines.
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softwarevisualizationmicrobiomeguishinyappsdataimportshiny-appsvisualisation
6.03 score 3 stars 1 dependents 5 scripts 320 downloadsenviPathR - Client for the 'enviPath' 'RESTful' API
The environmental pathway database ('enviPath') is a key resource for the functional annotation and pathway prediction of microbial communities, providing knowledge on biotransformation pathways along with the chemical reactions and produced compounds. This package enables the programmatic access to 'enviPath' by porting the database 'RESTful' API from R. This includes methods to both retrieve entries and predict pathways for custom compounds.
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softwaredataimportcheminformaticsannotationpathwaysfunctionalpredictionbiodegradationdatabaseenvipathmachine-learningpollution
4.54 score 1 stars 2 scripts 16 downloadsmiaDash - Dashboard for the interactive analysis and exploration of microbiome data
miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.
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microbiomesoftwarevisualizationguishinyappsdataimportbioinformaticsdashboardiseemiashinyvisualisationwebapp
4.48 score 1 stars 9 scripts 263 downloads